1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:3.39e-35:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTQ95_RS01780
Response regulator OmpR family
Thomasclavelia ramosa · GCF_019052555
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019052555#KTQ95_RS01780Stable P2CS identifier used across views.
GenomeGCF_019052555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:146:1.84e-22:221:77:77- Raw architecture: Response_reg:4:3.39e-35:112:111:111#Trans_reg_C:146:1.84e-22:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019052555::NZ_JAHQUV010000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84575-86427Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTQ95_01775RefSeq proteinWP_217294577.1
Context group ID
GCF_019052555::NZ_JAHQUV010000002.1::G00021Context members
KTQ95_RS01775KTQ95_RS01780
Partner locus tags
KTQ95_RS01775KTQ95_RS01780
Partner old locus tags
KTQ95_01770KTQ95_01775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217294577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTQ95_RS01780Primary locus identifier stored in the genes table.
Old locus tagKTQ95_01775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHQUV010000002.1Sequence record reported by the local genomic context database.
Genomic interval85 756-86 427 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 575-86 427 ntGCF_019052555::NZ_JAHQUV010000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019052555::NZ_JAHQUV010000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHQUV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span84 575-86 427 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 575 nt86 427 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KTQ95_RS01775GCF_019052555#KTQ95_RS01775
HKClassic
84 575-85 768 nt · Reverse (-)
KTQ95_RS01780GCF_019052555#KTQ95_RS01780
RROmpRCurrent focus
85 756-86 427 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052555#KTQ95_RS01780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1611305
Simplified PFAM architecture for RROC_1611305
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1611305
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_019052555#KTQ95_RS01780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019052555
AssemblyASM1905255v1 · Contighaploid
Genome composition3 724 105 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 61 · HK 28 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key