1 Response_reg#1
4-103 aa · 100 aa · 42.7% of protein
Raw token
Response_reg:4:0.00000000000356:103:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTQ95_RS00995
Response regulator LytTR family
Thomasclavelia ramosa · GCF_019052555
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019052555#KTQ95_RS00995Stable P2CS identifier used across views.
GenomeGCF_019052555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
134-221 aa · 88 aa · 37.6% of protein
Raw token
LytTR:134:0.00000000014:221:93:98- Raw architecture: Response_reg:4:0.00000000000356:103:106:111#LytTR:134:0.00000000014:221:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019052555::NZ_JAHQUV010000001.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span221021-221725Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTQ95_00995RefSeq proteinWP_003536945.1
Context group ID
GCF_019052555::NZ_JAHQUV010000001.1::G00013Context members
KTQ95_RS00995
Partner locus tags
KTQ95_RS00995
Partner old locus tags
KTQ95_00995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536945.1Primary protein accession used for annex mappings.
UniProt accessionB0N4G0Primary UniProt accession resolved in the annex database.
UniProt IDB0N4G0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTQ95_RS00995Primary locus identifier stored in the genes table.
Old locus tagKTQ95_00995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHQUV010000001.1Sequence record reported by the local genomic context database.
Genomic interval221 021-221 725 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span221 021-221 725 ntGCF_019052555::NZ_JAHQUV010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019052555::NZ_JAHQUV010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHQUV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span221 021-221 725 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
221 021 nt221 725 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KTQ95_RS00995GCF_019052555#KTQ95_RS00995
RRLytTRCurrent focus
221 021-221 725 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS07315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047407
Simplified PFAM architecture for RROC_1047407
PFAM domain coverage: 195 / 234 aa (83.3%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[136-221]
- Domain count: 2
- Matched identifier: RROC_1047407
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 136-221 ; LytTR 136-221
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS07315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019052555
AssemblyASM1905255v1 · Contighaploid
Genome composition3 724 105 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 61 · HK 28 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key