1 Response_reg#1
5-117 aa · 113 aa · 59.2% of protein
Raw token
Response_reg:5:0.00000000000000253:117:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPL25_RS02140
Response regulator, unclassified
Anaerostipes hadrus · GCF_018786105
ClassRRTypeunclassifiedLength191 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018786105#GPL25_RS02140Stable P2CS identifier used across views.
GenomeGCF_018786105Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 191 aa (59.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.00000000000000253:117:115:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018786105::NZ_WQRA01000010.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span35246-35821Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPL25_02130RefSeq proteinWP_252197464.1
Context group ID
GCF_018786105::NZ_WQRA01000010.1::G00002Context members
GPL25_RS02140
Partner locus tags
GPL25_RS02140
Partner old locus tags
GPL25_02130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_252197464.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPL25_RS02140Primary locus identifier stored in the genes table.
Old locus tagGPL25_02130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQRA01000010.1Sequence record reported by the local genomic context database.
Genomic interval35 246-35 821 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 246-35 821 ntGCF_018786105::NZ_WQRA01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018786105::NZ_WQRA01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQRA01000010.1All displayed genes belong to this local TCS context.
Neighborhood span35 246-35 821 nt576 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 246 nt35 821 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPL25_RS02140GCF_018786105#GPL25_RS02140
RRunclassifiedCurrent focus
35 246-35 821 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018786105#GPL25_RS02140The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2169110
Simplified PFAM architecture for RROC_2169110
PFAM domain coverage: 112 / 191 aa (58.6%)
1 aa191 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_2169110
- Positioned domains: Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_018786105#GPL25_RS02140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_018786105
AssemblyASM1878610v1 · Scaffoldhaploid
Genome composition3 008 717 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 51 · HK 26 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key