1 HisKA#1
337-403 aa · 67 aa · 9.3% of protein
Raw token
HisKA:337:0.000000000000221:403:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPL25_RS01360
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_018786105
ClassHKTypeHybridLength718 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018786105#GPL25_RS01360Stable P2CS identifier used across views.
GenomeGCF_018786105Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length718 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 718 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa718 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
450-567 aa · 118 aa · 16.4% of protein
Raw token
HATPase_c:450:5.2e-26:567:118:1093 Response_reg#3
591-708 aa · 118 aa · 16.4% of protein
Raw token
Response_reg:591:1.58e-30:708:118:111- Raw architecture: HisKA:337:0.000000000000221:403:67:64#HATPase_c:450:5.2e-26:567:118:109#Response_reg:591:1.58e-30:708:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018786105::NZ_WQRA01000007.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span17028-19184Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPL25_01350RefSeq proteinWP_215710888.1
Context group ID
GCF_018786105::NZ_WQRA01000007.1::G00027Context members
GPL25_RS01360
Partner locus tags
GPL25_RS01360
Partner old locus tags
GPL25_01350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215710888.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPL25_RS01360Primary locus identifier stored in the genes table.
Old locus tagGPL25_01350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQRA01000007.1Sequence record reported by the local genomic context database.
Genomic interval17 028-19 184 nt2 157 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 028-19 184 ntGCF_018786105::NZ_WQRA01000007.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018786105::NZ_WQRA01000007.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQRA01000007.1All displayed genes belong to this local TCS context.
Neighborhood span17 028-19 184 nt2 157 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 028 nt19 184 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPL25_RS01360GCF_018786105#GPL25_RS01360
HKHybridCurrent focus
17 028-19 184 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018786105#GPL25_RS01360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0737331
Simplified PFAM architecture for HKOC_0737331
PFAM domain coverage: 300 / 718 aa (41.8%)
1 aa718 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[337-403] | HATPase_c[451-566] | Response_reg[591-707]
- Domain count: 3
- Matched identifier: HKOC_0737331
- Positioned domains: HisKA 337-403 ; HATPase_c 451-566 ; Response_reg 591-707
Cluster members and taxonomy
Representative gene: GCF_018786105#GPL25_RS01360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_018786105
AssemblyASM1878610v1 · Scaffoldhaploid
Genome composition3 008 717 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 51 · HK 26 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key