1 Response_reg#1
13-122 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:13:7.04e-35:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW59_RS00375
Response regulator OmpR family
Bacillus mycoides · GCF_018741465
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741465#EXW59_RS00375Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 228 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-225 aa · 69 aa · 30.3% of protein
Raw token
Trans_reg_C:157:1.03e-27:225:74:77- Raw architecture: Response_reg:13:7.04e-35:122:111:111#Trans_reg_C:157:1.03e-27:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741465::NZ_CP036076.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25169-27308Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW59_00370RefSeq proteinWP_215559506.1
Context group ID
GCF_018741465::NZ_CP036076.1::G00069Context members
EXW59_RS00370EXW59_RS00375
Partner locus tags
EXW59_RS00370EXW59_RS00375
Partner old locus tags
EXW59_00365EXW59_00370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215559506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW59_RS00375Primary locus identifier stored in the genes table.
Old locus tagEXW59_00370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036076.1Sequence record reported by the local genomic context database.
Genomic interval26 622-27 308 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 169-27 308 ntGCF_018741465::NZ_CP036076.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741465::NZ_CP036076.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036076.1All displayed genes belong to this local TCS context.
Neighborhood span25 169-27 308 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 169 nt27 308 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW59_RS00370GCF_018741465#EXW59_RS00370
HKClassic
25 169-26 629 nt · Reverse (-)
EXW59_RS00375GCF_018741465#EXW59_RS00375
RROmpRCurrent focus
26 622-27 308 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741465#EXW59_RS00375The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1326497
Simplified PFAM architecture for RROC_1326497
PFAM domain coverage: 178 / 228 aa (78.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-121] | Trans_reg_C[157-225]
- Domain count: 2
- Matched identifier: RROC_1326497
- Positioned domains: Response_reg 13-121 ; Trans_reg_C 157-225
Cluster members and taxonomy
Representative gene: GCF_018741465#EXW59_RS00375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741465
AssemblyASM1874146v1 · Complete Genomehaploid
Genome composition6 338 271 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 68 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key