1 HAMP#1
167-236 aa · 70 aa · 14.4% of protein
Raw token
HAMP:167:0.000000000000033:236:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW59_RS00370
Histidine kinase, Classic
Bacillus mycoides · GCF_018741465
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741465#EXW59_RS00370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 486 aa (50.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-326 aa · 66 aa · 13.6% of protein
Raw token
HisKA:261:0.0000000000000588:326:66:643 HATPase_c#3
372-482 aa · 111 aa · 22.8% of protein
Raw token
HATPase_c:372:0.0000000000000131:482:112:109- Raw architecture: HAMP:167:0.000000000000033:236:70:69#HisKA:261:0.0000000000000588:326:66:64#HATPase_c:372:0.0000000000000131:482:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741465::NZ_CP036076.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25169-27308Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW59_00365RefSeq proteinWP_215559611.1
Context group ID
GCF_018741465::NZ_CP036076.1::G00069Context members
EXW59_RS00370EXW59_RS00375
Partner locus tags
EXW59_RS00370EXW59_RS00375
Partner old locus tags
EXW59_00365EXW59_00370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215559611.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW59_RS00370Primary locus identifier stored in the genes table.
Old locus tagEXW59_00365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036076.1Sequence record reported by the local genomic context database.
Genomic interval25 169-26 629 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 169-27 308 ntGCF_018741465::NZ_CP036076.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741465::NZ_CP036076.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036076.1All displayed genes belong to this local TCS context.
Neighborhood span25 169-27 308 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 169 nt27 308 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW59_RS00370GCF_018741465#EXW59_RS00370
HKClassicCurrent focus
25 169-26 629 nt · Reverse (-)
EXW59_RS00375GCF_018741465#EXW59_RS00375
RROmpR
26 622-27 308 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741465#EXW59_RS00370The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1571152
Simplified PFAM architecture for HKOC_1571152
PFAM domain coverage: 226 / 486 aa (46.5%)
1 aa486 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[185-236] | HisKA[262-326] | HATPase_c[375-483]
- Domain count: 3
- Matched identifier: HKOC_1571152
- Positioned domains: HAMP 185-236 ; HisKA 262-326 ; HATPase_c 375-483
Cluster members and taxonomy
Representative gene: GCF_018741465#EXW59_RS00370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741465
AssemblyASM1874146v1 · Complete Genomehaploid
Genome composition6 338 271 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 68 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key