1 HAMP#1
156-227 aa · 72 aa · 15.7% of protein
Raw token
HAMP:156:0.000000000251:227:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KJS44_RS01340
Histidine kinase, Classic
Longicatena caecimuris · GCF_018406465
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018406465#KJS44_RS01340Stable P2CS identifier used across views.
GenomeGCF_018406465Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Longicatena
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 458 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-297 aa · 65 aa · 14.2% of protein
Raw token
HisKA:233:0.000000000000123:297:65:643 HATPase_c#3
342-451 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:342:5.01e-28:451:110:109- Raw architecture: HAMP:156:0.000000000251:227:72:69#HisKA:233:0.000000000000123:297:65:64#HATPase_c:342:5.01e-28:451:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018406465::NZ_AP024510.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span285590-287637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL3BBH23_02700RefSeq proteinWP_008691250.1
Context group ID
GCF_018406465::NZ_AP024510.1::G00004Context members
KJS44_RS01340KJS44_RS01345
Partner locus tags
KJS44_RS01340KJS44_RS01345
Partner old locus tags
L3BBH23_02700L3BBH23_02710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008691250.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKJS44_RS01340Primary locus identifier stored in the genes table.
Old locus tagL3BBH23_02700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024510.1Sequence record reported by the local genomic context database.
Genomic interval285 590-286 966 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span285 590-287 637 ntGCF_018406465::NZ_AP024510.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018406465::NZ_AP024510.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024510.1All displayed genes belong to this local TCS context.
Neighborhood span285 590-287 637 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 590 nt287 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KJS44_RS01340GCF_018406465#KJS44_RS01340
HKClassicCurrent focus
285 590-286 966 nt · Reverse (-)
KJS44_RS01345GCF_018406465#KJS44_RS01345
RROmpR
286 963-287 637 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018406465#KJS44_RS01340The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1865693
Simplified PFAM architecture for HKOC_1865693
PFAM domain coverage: 228 / 458 aa (49.8%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[173-226] | HisKA[233-296] | HATPase_c[342-451]
- Domain count: 3
- Matched identifier: HKOC_1865693
- Positioned domains: HAMP 173-226 ; HisKA 233-296 ; HATPase_c 342-451
Cluster members and taxonomy
Representative gene: GCF_018406465#KJS44_RS01340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 796 635 · GCF_018406465
AssemblyASM1840646v1 · Complete Genomereference genome · haploid
Genome composition3 103 757 bp · 38,5% GCLongicatena caecimuris
Signal transduction countsGenes 54 · HK 26 · RR 28CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusLongicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Longicatena
Related genes
Preview from the same derived genome key