1 HAMP#1
218-287 aa · 70 aa · 13.5% of protein
Raw token
HAMP:218:0.00000000052:287:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KJS44_RS00170
Histidine kinase, Classic
Longicatena caecimuris · GCF_018406465
ClassHKTypeClassicLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018406465#KJS44_RS00170Stable P2CS identifier used across views.
GenomeGCF_018406465Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Longicatena
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 519 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HisKA#2
292-355 aa · 64 aa · 12.3% of protein
Raw token
HisKA:292:2.77e-20:355:64:643 HATPase_c#3
400-510 aa · 111 aa · 21.4% of protein
Raw token
HATPase_c:400:1.83e-27:510:111:109- Raw architecture: HAMP:218:0.00000000052:287:70:69#HisKA:292:2.77e-20:355:64:64#HATPase_c:400:1.83e-27:510:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018406465::NZ_AP024510.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35600-37823Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL3BBH23_00330RefSeq proteinWP_008690885.1
Context group ID
GCF_018406465::NZ_AP024510.1::G00001Context members
KJS44_RS00165KJS44_RS00170
Partner locus tags
KJS44_RS00165KJS44_RS00170
Partner old locus tags
L3BBH23_00320L3BBH23_00330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008690885.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKJS44_RS00170Primary locus identifier stored in the genes table.
Old locus tagL3BBH23_00330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024510.1Sequence record reported by the local genomic context database.
Genomic interval36 264-37 823 nt1 560 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 600-37 823 ntGCF_018406465::NZ_AP024510.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018406465::NZ_AP024510.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024510.1All displayed genes belong to this local TCS context.
Neighborhood span35 600-37 823 nt2 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 600 nt37 823 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KJS44_RS00165GCF_018406465#KJS44_RS00165
RROmpR
35 600-36 280 nt · Forward (+)
KJS44_RS00170GCF_018406465#KJS44_RS00170
HKClassicCurrent focus
36 264-37 823 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018406465#KJS44_RS00170The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1395324
Simplified PFAM architecture for HKOC_1395324
PFAM domain coverage: 174 / 519 aa (33.5%)
1 aa519 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[292-355] | HATPase_c[401-510]
- Domain count: 2
- Matched identifier: HKOC_1395324
- Positioned domains: HisKA 292-355 ; HATPase_c 401-510
Cluster members and taxonomy
Representative gene: GCF_018406465#KJS44_RS00170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 796 635 · GCF_018406465
AssemblyASM1840646v1 · Complete Genomereference genome · haploid
Genome composition3 103 757 bp · 38,5% GCLongicatena caecimuris
Signal transduction countsGenes 54 · HK 26 · RR 28CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusLongicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Longicatena
Related genes
Preview from the same derived genome key