1 HAMP#1
265-335 aa · 71 aa · 12.7% of protein
Raw token
HAMP:265:0.0000000101:335:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KJS44_RS00440
Histidine kinase, Classic
Longicatena caecimuris · GCF_018406465
ClassHKTypeClassicLength558 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018406465#KJS44_RS00440Stable P2CS identifier used across views.
GenomeGCF_018406465Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Longicatena
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length558 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 558 aa (44.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa558 aa
Domain-by-domain annotation3 items
2 His_kinase#2
350-429 aa · 80 aa · 14.3% of protein
Raw token
His_kinase:350:3.92e-32:429:80:803 HATPase_c#3
449-546 aa · 98 aa · 17.6% of protein
Raw token
HATPase_c:449:0.000000000157:546:108:109- Raw architecture: HAMP:265:0.0000000101:335:71:69#His_kinase:350:3.92e-32:429:80:80#HATPase_c:449:0.000000000157:546:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018406465::NZ_AP024510.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93491-96722Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL3BBH23_00900RefSeq proteinWP_226896800.1
Context group ID
GCF_018406465::NZ_AP024510.1::G00003Context members
KJS44_RS00440KJS44_RS00445
Partner locus tags
KJS44_RS00440KJS44_RS00445
Partner old locus tags
L3BBH23_00900L3BBH23_00910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226896800.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKJS44_RS00440Primary locus identifier stored in the genes table.
Old locus tagL3BBH23_00900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024510.1Sequence record reported by the local genomic context database.
Genomic interval93 491-95 167 nt1 677 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span93 491-96 722 ntGCF_018406465::NZ_AP024510.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018406465::NZ_AP024510.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024510.1All displayed genes belong to this local TCS context.
Neighborhood span93 491-96 722 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 491 nt96 722 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KJS44_RS00440GCF_018406465#KJS44_RS00440
HKClassicCurrent focus
93 491-95 167 nt · Forward (+)
KJS44_RS00445GCF_018406465#KJS44_RS00445
RRunclassified
95 142-96 722 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004341945#EDD61_RS10065Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1265754
Simplified PFAM architecture for HKOC_1265754
PFAM domain coverage: 174 / 558 aa (31.2%)
1 aa558 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[351-427] | HATPase_c[449-545]
- Domain count: 2
- Matched identifier: HKOC_1265754
- Positioned domains: His_kinase 351-427 ; HATPase_c 449-545
Cluster members and taxonomy
Representative gene: GCF_004341945#EDD61_RS10065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 796 635 · GCF_018406465
AssemblyASM1840646v1 · Complete Genomereference genome · haploid
Genome composition3 103 757 bp · 38,5% GCLongicatena caecimuris
Signal transduction countsGenes 54 · HK 26 · RR 28CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusLongicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Longicatena
Related genes
Preview from the same derived genome key