1 Response_reg#1
4-113 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:4:1.67e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS02205
Response regulator OmpR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS02205Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:152:3.3e-31:228:77:77- Raw architecture: Response_reg:4:1.67e-37:113:111:111#Trans_reg_C:152:3.3e-31:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000024.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79981-83409Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_02185RefSeq proteinWP_118514313.1
Context group ID
GCF_016939255::NZ_JAFHBC010000024.1::G00013Context members
JTJ22_RS02200JTJ22_RS02205
Partner locus tags
JTJ22_RS02200JTJ22_RS02205
Partner old locus tags
JTJ22_02180JTJ22_02185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118514313.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS02205Primary locus identifier stored in the genes table.
Old locus tagJTJ22_02185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000024.1Sequence record reported by the local genomic context database.
Genomic interval82 708-83 409 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 981-83 409 ntGCF_016939255::NZ_JAFHBC010000024.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000024.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000024.1All displayed genes belong to this local TCS context.
Neighborhood span79 981-83 409 nt3 429 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 981 nt83 409 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS02200GCF_016939255#JTJ22_RS02200
HKClassic
79 981-82 665 nt · Reverse (-)
JTJ22_RS02205GCF_016939255#JTJ22_RS02205
RROmpRCurrent focus
82 708-83 409 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS02205The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1097994
Simplified PFAM architecture for RROC_1097994
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1097994
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS02205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key