1 HisKA_3#1
134-198 aa · 65 aa · 19.4% of protein
Raw token
HisKA_3:134:0.0000000000000513:198:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS00630
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS00630Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 335 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-330 aa · 96 aa · 28.7% of protein
Raw token
HATPase_c:235:0.00000000025:330:104:109- Raw architecture: HisKA_3:134:0.0000000000000513:198:67:68#HATPase_c:235:0.00000000025:330:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000004.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100491-102252Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_00620RefSeq proteinWP_278591839.1
Context group ID
GCF_016939255::NZ_JAFHBC010000004.1::G00002Context members
JTJ22_RS00630JTJ22_RS00635
Partner locus tags
JTJ22_RS00630JTJ22_RS00635
Partner old locus tags
JTJ22_00620JTJ22_00625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278591839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS00630Primary locus identifier stored in the genes table.
Old locus tagJTJ22_00620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000004.1Sequence record reported by the local genomic context database.
Genomic interval100 491-101 498 nt1 008 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 491-102 252 ntGCF_016939255::NZ_JAFHBC010000004.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000004.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000004.1All displayed genes belong to this local TCS context.
Neighborhood span100 491-102 252 nt1 762 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 491 nt102 252 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS00630GCF_016939255#JTJ22_RS00630
HKClassicCurrent focus
100 491-101 498 nt · Forward (+)
JTJ22_RS00635GCF_016939255#JTJ22_RS00635
RRNarL
101 632-102 252 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS00630The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2848857
Simplified PFAM architecture for HKOC_2848857
PFAM domain coverage: 161 / 335 aa (48.1%)
1 aa335 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[134-197] | HATPase_c[235-331]
- Domain count: 2
- Matched identifier: HKOC_2848857
- Positioned domains: HisKA_3 134-197 ; HATPase_c 235-331
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS00630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key