1 Response_reg#1
5-117 aa · 113 aa · 44.3% of protein
Raw token
Response_reg:5:6.32e-31:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS01920
Response regulator, unclassified
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassRRTypeunclassifiedLength255 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS01920Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 255 aa (73.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
155-195 aa · 41 aa · 16.1% of protein
Raw token
HTH_AraC:155:0.000000018:195:41:423 HTH_AraC#3
212-245 aa · 34 aa · 13.3% of protein
Raw token
HTH_AraC:212:0.00000000238:245:34:42- Raw architecture: Response_reg:5:6.32e-31:117:113:111#HTH_AraC:155:0.000000018:195:41:42#HTH_AraC:212:0.00000000238:245:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000024.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20739-23313Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_01900RefSeq proteinWP_278592106.1
Context group ID
GCF_016939255::NZ_JAFHBC010000024.1::G00012Context members
JTJ22_RS01920JTJ22_RS01925
Partner locus tags
JTJ22_RS01920JTJ22_RS01925
Partner old locus tags
JTJ22_01900JTJ22_01905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592106.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS01920Primary locus identifier stored in the genes table.
Old locus tagJTJ22_01900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000024.1Sequence record reported by the local genomic context database.
Genomic interval20 739-21 506 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 739-23 313 ntGCF_016939255::NZ_JAFHBC010000024.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000024.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000024.1All displayed genes belong to this local TCS context.
Neighborhood span20 739-23 313 nt2 575 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 739 nt23 313 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS01920GCF_016939255#JTJ22_RS01920
RRunclassifiedCurrent focus
20 739-21 506 nt · Reverse (-)
JTJ22_RS01925GCF_016939255#JTJ22_RS01925
HKClassic
21 511-23 313 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS01920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0683226
Simplified PFAM architecture for RROC_0683226
PFAM domain coverage: 190 / 255 aa (74.5%)
1 aa255 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[169-246]
- Domain count: 2
- Matched identifier: RROC_0683226
- Positioned domains: Response_reg 5-116 ; HTH_18 169-246
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS01920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key