1 HisKA#1
202-262 aa · 61 aa · 14.6% of protein
Raw token
HisKA:202:0.0000000000272:262:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS01830
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength419 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS01830Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length419 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 419 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa419 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
311-419 aa · 109 aa · 26.0% of protein
Raw token
HATPase_c:311:1.35e-27:419:109:109- Raw architecture: HisKA:202:0.0000000000272:262:61:64#HATPase_c:311:1.35e-27:419:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000023.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span688-2609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_01810RefSeq proteinWP_278592096.1
Context group ID
GCF_016939255::NZ_JAFHBC010000023.1::G00011Context members
JTJ22_RS01825JTJ22_RS01830
Partner locus tags
JTJ22_RS01825JTJ22_RS01830
Partner old locus tags
JTJ22_01805JTJ22_01810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592096.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS01830Primary locus identifier stored in the genes table.
Old locus tagJTJ22_01810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000023.1Sequence record reported by the local genomic context database.
Genomic interval1 350-2 609 nt1 260 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span688-2 609 ntGCF_016939255::NZ_JAFHBC010000023.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000023.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000023.1All displayed genes belong to this local TCS context.
Neighborhood span688-2 609 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
688 nt2 609 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS01825GCF_016939255#JTJ22_RS01825
RROmpR
688-1 347 nt · Forward (+)
JTJ22_RS01830GCF_016939255#JTJ22_RS01830
HKClassicCurrent focus
1 350-2 609 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS01830The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2279114
Simplified PFAM architecture for HKOC_2279114
PFAM domain coverage: 165 / 419 aa (39.4%)
1 aa419 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[204-262] | HATPase_c[312-417]
- Domain count: 2
- Matched identifier: HKOC_2279114
- Positioned domains: HisKA 204-262 ; HATPase_c 312-417
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS01830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key