1 Response_reg#1
6-115 aa · 110 aa · 45.3% of protein
Raw token
Response_reg:6:7.6e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS01660
Response regulator OmpR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS01660Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 243 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 31.7% of protein
Raw token
Trans_reg_C:153:1.83e-23:229:77:77- Raw architecture: Response_reg:6:7.6e-39:115:111:111#Trans_reg_C:153:1.83e-23:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000018.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1091-3398Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_01645RefSeq proteinWP_118063965.1
Context group ID
GCF_016939255::NZ_JAFHBC010000018.1::G00006Context members
JTJ22_RS01660JTJ22_RS01665
Partner locus tags
JTJ22_RS01660JTJ22_RS01665
Partner old locus tags
JTJ22_01645JTJ22_01650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118063965.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS01660Primary locus identifier stored in the genes table.
Old locus tagJTJ22_01645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000018.1Sequence record reported by the local genomic context database.
Genomic interval1 091-1 822 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 091-3 398 ntGCF_016939255::NZ_JAFHBC010000018.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000018.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000018.1All displayed genes belong to this local TCS context.
Neighborhood span1 091-3 398 nt2 308 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 091 nt3 398 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS01660GCF_016939255#JTJ22_RS01660
RROmpRCurrent focus
1 091-1 822 nt · Reverse (-)
JTJ22_RS01665GCF_016939255#JTJ22_RS01665
HKClassic
1 815-3 398 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS09280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0829573
Simplified PFAM architecture for RROC_0829573
PFAM domain coverage: 186 / 243 aa (76.5%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0829573
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS09280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key