1 Response_reg#1
9-119 aa · 111 aa · 45.7% of protein
Raw token
Response_reg:9:6.59e-37:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JL743_RS00200
Response regulator OmpR family
Bifidobacterium longum subsp. longum · GCF_016759765
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016759765#JL743_RS00200Stable P2CS identifier used across views.
GenomeGCF_016759765Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 243 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-238 aa · 86 aa · 35.4% of protein
Raw token
Trans_reg_C:153:3.2e-29:238:86:77- Raw architecture: Response_reg:9:6.59e-37:119:111:111#Trans_reg_C:153:3.2e-29:238:86:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016759765::NZ_JAERWG010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44913-47666Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJL743_00200RefSeq proteinWP_202581757.1
Context group ID
GCF_016759765::NZ_JAERWG010000001.1::G00001Context members
JL743_RS00200JL743_RS00205
Partner locus tags
JL743_RS00200JL743_RS00205
Partner old locus tags
JL743_00200JL743_00205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202581757.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJL743_RS00200Primary locus identifier stored in the genes table.
Old locus tagJL743_00200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAERWG010000001.1Sequence record reported by the local genomic context database.
Genomic interval44 913-45 644 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 913-47 666 ntGCF_016759765::NZ_JAERWG010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016759765::NZ_JAERWG010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAERWG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span44 913-47 666 nt2 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 913 nt47 666 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JL743_RS00200GCF_016759765#JL743_RS00200
RROmpRCurrent focus
44 913-45 644 nt · Forward (+)
JL743_RS00205GCF_016759765#JL743_RS00205
HKClassic
45 675-47 666 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016759765#JL743_RS00200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0833077
Simplified PFAM architecture for RROC_0833077
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[153-237]
- Domain count: 2
- Matched identifier: RROC_0833077
- Positioned domains: Response_reg 9-119 ; Trans_reg_C 153-237
Cluster members and taxonomy
Representative gene: GCF_016759765#JL743_RS00200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_016759765
AssemblyASM1675976v1 · Contighaploid
Genome composition2 305 647 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key