1 HisKA_3#1
245-307 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:245:1.69e-17:307:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JL743_RS03345
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_016759765
ClassHKTypeClassicLength872 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016759765#JL743_RS03345Stable P2CS identifier used across views.
GenomeGCF_016759765Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length872 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 872 aa (25.8%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa872 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
356-442 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:356:0.00000000000212:442:104:1093 HisKA_3#3
768-842 aa · 75 aa · 8.6% of protein
Raw token
HisKA_3:768:0.0000961:842:75:68- Raw architecture: HisKA_3:245:1.69e-17:307:63:68#HATPase_c:356:0.00000000000212:442:104:109#HisKA_3:768:0.0000961:842:75:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016759765::NZ_JAERWG010000005.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98965-102405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJL743_03350RefSeq proteinWP_202570839.1
Context group ID
GCF_016759765::NZ_JAERWG010000005.1::G00008Context members
JL743_RS03345JL743_RS03350
Partner locus tags
JL743_RS03345JL743_RS03350
Partner old locus tags
JL743_03350JL743_03355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202570839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJL743_RS03345Primary locus identifier stored in the genes table.
Old locus tagJL743_03350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAERWG010000005.1Sequence record reported by the local genomic context database.
Genomic interval98 965-101 583 nt2 619 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span98 965-102 405 ntGCF_016759765::NZ_JAERWG010000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016759765::NZ_JAERWG010000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAERWG010000005.1All displayed genes belong to this local TCS context.
Neighborhood span98 965-102 405 nt3 441 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 965 nt102 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JL743_RS03345GCF_016759765#JL743_RS03345
HKClassicCurrent focus
98 965-101 583 nt · Forward (+)
JL743_RS03350GCF_016759765#JL743_RS03350
RRNarL
101 659-102 405 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016759755#JL740_RS02940Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0456786
Simplified PFAM architecture for HKOC_0456786
PFAM domain coverage: 422 / 872 aa (48.4%)
1 aa872 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[245-307] | HATPase_c[356-443] | DUF7134[557-689]
- Domain count: 4
- Matched identifier: HKOC_0456786
- Positioned domains: DUF7134 10-147 ; HisKA_3 245-307 ; HATPase_c 356-443 ; DUF7134 557-689
Cluster members and taxonomy
Representative gene: GCF_016759755#JL740_RS02940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_016759765
AssemblyASM1675976v1 · Contighaploid
Genome composition2 305 647 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key