1 HAMP#1
200-263 aa · 64 aa · 12.8% of protein
Raw token
HAMP:200:0.0000000000475:263:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS85_RS28250
Histidine kinase, Classic
Bacillus cereus · GCF_016483525
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483525#JDS85_RS28250Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 501 aa (47.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-343 aa · 68 aa · 13.6% of protein
Raw token
HisKA:276:0.00000000000000123:343:68:643 HATPase_c#3
390-497 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:390:2.56e-21:497:109:109- Raw architecture: HAMP:200:0.0000000000475:263:64:69#HisKA:276:0.00000000000000123:343:68:64#HATPase_c:390:2.56e-21:497:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483525::NZ_JAEHBS010000052.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13195-15385Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS85_28235RefSeq proteinWP_199678277.1
Context group ID
GCF_016483525::NZ_JAEHBS010000052.1::G00061Context members
JDS85_RS28245JDS85_RS28250
Partner locus tags
JDS85_RS28245JDS85_RS28250
Partner old locus tags
JDS85_28230JDS85_28235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199678277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS85_RS28250Primary locus identifier stored in the genes table.
Old locus tagJDS85_28235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBS010000052.1Sequence record reported by the local genomic context database.
Genomic interval13 880-15 385 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 195-15 385 ntGCF_016483525::NZ_JAEHBS010000052.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483525::NZ_JAEHBS010000052.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBS010000052.1All displayed genes belong to this local TCS context.
Neighborhood span13 195-15 385 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 195 nt15 385 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS85_RS28245GCF_016483525#JDS85_RS28245
RROmpR
13 195-13 896 nt · Forward (+)
JDS85_RS28250GCF_016483525#JDS85_RS28250
HKClassicCurrent focus
13 880-15 385 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483525#JDS85_RS28250The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1471041
Simplified PFAM architecture for HKOC_1471041
PFAM domain coverage: 219 / 501 aa (43.7%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[220-263] | HisKA[276-342] | HATPase_c[390-497]
- Domain count: 3
- Matched identifier: HKOC_1471041
- Positioned domains: HAMP 220-263 ; HisKA 276-342 ; HATPase_c 390-497
Cluster members and taxonomy
Representative gene: GCF_016483525#JDS85_RS28250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483525
AssemblyASM1648352v1 · Contighaploid
Genome composition5 758 577 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key