1 Response_reg#1
3-115 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:3:5.33e-25:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS85_RS04015
Response regulator, unclassified
Bacillus cereus · GCF_016483525
ClassRRTypeunclassifiedLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483525#JDS85_RS04015Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 231 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
137-177 aa · 41 aa · 17.7% of protein
Raw token
HTH_AraC:137:0.000000000943:177:41:423 HTH_AraC#3
189-228 aa · 40 aa · 17.3% of protein
Raw token
HTH_AraC:189:0.000000012:228:42:42- Raw architecture: Response_reg:3:5.33e-25:115:113:111#HTH_AraC:137:0.000000000943:177:41:42#HTH_AraC:189:0.000000012:228:42:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483525::NZ_JAEHBS010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span757970-759435Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS85_04015RefSeq proteinWP_063224785.1
Context group ID
GCF_016483525::NZ_JAEHBS010000001.1::G00004Context members
JDS85_RS04010JDS85_RS04015
Partner locus tags
JDS85_RS04010JDS85_RS04015
Partner old locus tags
JDS85_04010JDS85_04015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063224785.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0XCL6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0XCL6_BACANDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS85_RS04015Primary locus identifier stored in the genes table.
Old locus tagJDS85_04015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBS010000001.1Sequence record reported by the local genomic context database.
Genomic interval758 740-759 435 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span757 970-759 435 ntGCF_016483525::NZ_JAEHBS010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483525::NZ_JAEHBS010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span757 970-759 435 nt1 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
757 970 nt759 435 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS85_RS04010GCF_016483525#JDS85_RS04010
HKClassic
757 970-758 743 nt · Forward (+)
JDS85_RS04015GCF_016483525#JDS85_RS04015
RRunclassifiedCurrent focus
758 740-759 435 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS25250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_1163803
Simplified PFAM architecture for RROC_1163803
PFAM domain coverage: 187 / 231 aa (81.0%)
1 aa231 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[3-114] | HTH_AraC[137-177] | HTH_AraC[195-228]
- Domain count: 3
- Matched identifier: RROC_1163803
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; HTH_AraC 137-177 ; HTH_AraC 137-177 ; HTH_AraC 195-228 ; HTH_AraC 195-228
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS25250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483525
AssemblyASM1648352v1 · Contighaploid
Genome composition5 758 577 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key