1 HAMP#1
55-122 aa · 68 aa · 20.4% of protein
Raw token
HAMP:55:0.000000332:122:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS20040
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS20040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 333 aa (61.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.2% of protein
Raw token
HisKA:137:0.00000000635:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.6% of protein
Raw token
HATPase_c:246:0.0000000000391:327:103:109- Raw architecture: HAMP:55:0.000000332:122:68:69#HisKA:137:0.00000000635:190:54:64#HATPase_c:246:0.0000000000391:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000031.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50843-52512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_20095RefSeq proteinWP_199674816.1
Context group ID
GCF_016483475::NZ_JAEHBV010000031.1::G00040Context members
JDS87_RS20035JDS87_RS20040
Partner locus tags
JDS87_RS20035JDS87_RS20040
Partner old locus tags
JDS87_20090JDS87_20095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199674816.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS20040Primary locus identifier stored in the genes table.
Old locus tagJDS87_20095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000031.1Sequence record reported by the local genomic context database.
Genomic interval51 511-52 512 nt1 002 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 843-52 512 ntGCF_016483475::NZ_JAEHBV010000031.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000031.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000031.1All displayed genes belong to this local TCS context.
Neighborhood span50 843-52 512 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 843 nt52 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS20035GCF_016483475#JDS87_RS20035
RROmpR
50 843-51 514 nt · Forward (+)
JDS87_RS20040GCF_016483475#JDS87_RS20040
HKClassicCurrent focus
51 511-52 512 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS20040The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2852355
Simplified PFAM architecture for HKOC_2852355
PFAM domain coverage: 134 / 333 aa (40.2%)
1 aa333 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-190] | HATPase_c[247-326]
- Domain count: 2
- Matched identifier: HKOC_2852355
- Positioned domains: HisKA 137-190 ; HATPase_c 247-326
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS20040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key