1 Response_reg#1
6-113 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:6:1.1e-27:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS20035
Response regulator OmpR family
Bacillus cereus · GCF_016483475
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS20035Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 223 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-217 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:146:5.43e-16:217:75:77- Raw architecture: Response_reg:6:1.1e-27:113:111:111#Trans_reg_C:146:5.43e-16:217:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000031.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50843-52512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_20090RefSeq proteinWP_199674815.1
Context group ID
GCF_016483475::NZ_JAEHBV010000031.1::G00040Context members
JDS87_RS20035JDS87_RS20040
Partner locus tags
JDS87_RS20035JDS87_RS20040
Partner old locus tags
JDS87_20090JDS87_20095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199674815.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS20035Primary locus identifier stored in the genes table.
Old locus tagJDS87_20090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000031.1Sequence record reported by the local genomic context database.
Genomic interval50 843-51 514 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 843-52 512 ntGCF_016483475::NZ_JAEHBV010000031.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000031.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000031.1All displayed genes belong to this local TCS context.
Neighborhood span50 843-52 512 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 843 nt52 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS20035GCF_016483475#JDS87_RS20035
RROmpRCurrent focus
50 843-51 514 nt · Forward (+)
JDS87_RS20040GCF_016483475#JDS87_RS20040
HKClassic
51 511-52 512 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS20035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1609026
Simplified PFAM architecture for RROC_1609026
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1609026
- Positioned domains: Response_reg 6-112 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS20035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key