1 HAMP#1
298-365 aa · 68 aa · 11.3% of protein
Raw token
HAMP:298:0.0000000000005:365:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS18900
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS18900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 604 aa (40.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation3 items
2 HisKA#2
385-449 aa · 65 aa · 10.8% of protein
Raw token
HisKA:385:0.0000000000000397:449:65:643 HATPase_c#3
493-603 aa · 111 aa · 18.4% of protein
Raw token
HATPase_c:493:6.61e-24:603:112:109- Raw architecture: HAMP:298:0.0000000000005:365:68:69#HisKA:385:0.0000000000000397:449:65:64#HATPase_c:493:6.61e-24:603:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000028.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11805-14305Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_18955RefSeq proteinWP_199674549.1
Context group ID
GCF_016483475::NZ_JAEHBV010000028.1::G00031Context members
JDS87_RS18900JDS87_RS18905
Partner locus tags
JDS87_RS18900JDS87_RS18905
Partner old locus tags
JDS87_18955JDS87_18960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199674549.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS18900Primary locus identifier stored in the genes table.
Old locus tagJDS87_18955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000028.1Sequence record reported by the local genomic context database.
Genomic interval11 805-13 619 nt1 815 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 805-14 305 ntGCF_016483475::NZ_JAEHBV010000028.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000028.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000028.1All displayed genes belong to this local TCS context.
Neighborhood span11 805-14 305 nt2 501 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 805 nt14 305 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS18900GCF_016483475#JDS87_RS18900
HKClassicCurrent focus
11 805-13 619 nt · Reverse (-)
JDS87_RS18905GCF_016483475#JDS87_RS18905
RROmpR
13 616-14 305 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS18900The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1034639
Simplified PFAM architecture for HKOC_1034639
PFAM domain coverage: 226 / 604 aa (37.4%)
1 aa604 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[316-365] | HisKA[385-449] | HATPase_c[493-603]
- Domain count: 3
- Matched identifier: HKOC_1034639
- Positioned domains: HAMP 316-365 ; HisKA 385-449 ; HATPase_c 493-603
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS18900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key