1 Response_reg#1
7-119 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:7:9.7e-29:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS18495
Response regulator, unclassified
Bacillus cereus · GCF_016483475
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483475#JDS87_RS18495Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 230 aa (67.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_11#2
171-212 aa · 42 aa · 18.3% of protein
Raw token
HTH_11:171:0.0000887:212:43:52- Raw architecture: Response_reg:7:9.7e-29:119:113:111#HTH_11:171:0.0000887:212:43:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483475::NZ_JAEHBV010000027.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span912-1604Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_18550RefSeq proteinWP_199674495.1
Context group ID
GCF_016483475::NZ_JAEHBV010000027.1::G00027Context members
JDS87_RS18495
Partner locus tags
JDS87_RS18495
Partner old locus tags
JDS87_18550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199674495.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS18495Primary locus identifier stored in the genes table.
Old locus tagJDS87_18550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000027.1Sequence record reported by the local genomic context database.
Genomic interval912-1 604 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span912-1 604 ntGCF_016483475::NZ_JAEHBV010000027.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000027.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000027.1All displayed genes belong to this local TCS context.
Neighborhood span912-1 604 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
912 nt1 604 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS87_RS18495GCF_016483475#JDS87_RS18495
RRunclassifiedCurrent focus
912-1 604 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS18495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1219803
Simplified PFAM architecture for RROC_1219803
PFAM domain coverage: 160 / 230 aa (69.6%)
1 aa230 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-118] | HTH_64[179-226]
- Domain count: 2
- Matched identifier: RROC_1219803
- Positioned domains: Response_reg 7-118 ; HTH_64 179-226
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS18495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key