1 HAMP#1
161-229 aa · 69 aa · 14.8% of protein
Raw token
HAMP:161:0.00000000000000485:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS14020
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483475#JDS87_RS14020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 466 aa (54.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.2% of protein
Raw token
HisKA:234:0.0000000000000154:299:66:643 HATPase_c#3
346-465 aa · 120 aa · 25.8% of protein
Raw token
HATPase_c:346:2.21e-35:465:120:109- Raw architecture: HAMP:161:0.00000000000000485:229:69:69#HisKA:234:0.0000000000000154:299:66:64#HATPase_c:346:2.21e-35:465:120:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483475::NZ_JAEHBV010000017.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span31322-32722Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_14055RefSeq proteinWP_199673873.1
Context group ID
GCF_016483475::NZ_JAEHBV010000017.1::G00020Context members
JDS87_RS14020
Partner locus tags
JDS87_RS14020
Partner old locus tags
JDS87_14055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199673873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS14020Primary locus identifier stored in the genes table.
Old locus tagJDS87_14055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000017.1Sequence record reported by the local genomic context database.
Genomic interval31 322-32 722 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 322-32 722 ntGCF_016483475::NZ_JAEHBV010000017.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000017.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000017.1All displayed genes belong to this local TCS context.
Neighborhood span31 322-32 722 nt1 401 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 322 nt32 722 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS87_RS14020GCF_016483475#JDS87_RS14020
HKClassicCurrent focus
31 322-32 722 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS14020The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1766741
Simplified PFAM architecture for HKOC_1766741
PFAM domain coverage: 237 / 466 aa (50.9%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-299] | HATPase_c[346-465]
- Domain count: 3
- Matched identifier: HKOC_1766741
- Positioned domains: HAMP 178-229 ; HisKA 235-299 ; HATPase_c 346-465
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS14020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key