1 GAF#1
29-166 aa · 138 aa · 26.4% of protein
Raw token
GAF:29:0.00000000000313:166:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS12425
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS12425Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFGAF_3HisKA_3HATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage413 / 523 aa (79.0%)Merged over positioned domains only.
Domain description1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation4 items
2 GAF_3#2
203-318 aa · 116 aa · 22.2% of protein
Raw token
GAF_3:203:0.00000000022:318:123:1293 HisKA_3#3
333-400 aa · 68 aa · 13.0% of protein
Raw token
HisKA_3:333:2.11e-20:400:68:684 HATPase_c#4
433-523 aa · 91 aa · 17.4% of protein
Raw token
HATPase_c:433:0.000000000712:523:106:109- Raw architecture: GAF:29:0.00000000000313:166:141:133#GAF_3:203:0.00000000022:318:123:129#HisKA_3:333:2.11e-20:400:68:68#HATPase_c:433:0.000000000712:523:106:109
- Domain description: 1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000014.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66285-68524Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_12455RefSeq proteinWP_199673545.1
Context group ID
GCF_016483475::NZ_JAEHBV010000014.1::G00016Context members
JDS87_RS12425JDS87_RS12430
Partner locus tags
JDS87_RS12425JDS87_RS12430
Partner old locus tags
JDS87_12455JDS87_12460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199673545.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS12425Primary locus identifier stored in the genes table.
Old locus tagJDS87_12455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000014.1Sequence record reported by the local genomic context database.
Genomic interval66 285-67 856 nt1 572 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 285-68 524 ntGCF_016483475::NZ_JAEHBV010000014.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000014.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000014.1All displayed genes belong to this local TCS context.
Neighborhood span66 285-68 524 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 285 nt68 524 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS12425GCF_016483475#JDS87_RS12425
HKClassicCurrent focus
66 285-67 856 nt · Forward (+)
JDS87_RS12430GCF_016483475#JDS87_RS12430
RRNarL
67 877-68 524 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS12425The current gene is the representative for this cluster.
PFAM architectureGAF_2 + GAF_3 + HisKA_3 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1381628
Simplified PFAM architecture for HKOC_1381628
PFAM domain coverage: 413 / 523 aa (79.0%)
1 aa523 aa
GAF_2GAF_3HisKA_3HATPase_c
- Simplified architecture: GAF_2 + GAF_3 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[28-166] | GAF_3[203-318] | HisKA_3[333-400] | HATPase_c[434-523]
- Domain count: 4
- Matched identifier: HKOC_1381628
- Positioned domains: GAF_2 28-166 ; GAF_3 203-318 ; HisKA_3 333-400 ; HATPase_c 434-523
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS12425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key