1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.00000000000000142:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS12085
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS12085Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 458 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000443:303:61:643 HATPase_c#3
349-437 aa · 89 aa · 19.4% of protein
Raw token
HATPase_c:349:8.71e-18:437:92:109- Raw architecture: HAMP:165:0.00000000000000142:232:68:69#HisKA:244:0.00000000000443:303:61:64#HATPase_c:349:8.71e-18:437:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000013.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110017-112033Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_12115RefSeq proteinWP_199673494.1
Context group ID
GCF_016483475::NZ_JAEHBV010000013.1::G00012Context members
JDS87_RS12080JDS87_RS12085
Partner locus tags
JDS87_RS12080JDS87_RS12085
Partner old locus tags
JDS87_12110JDS87_12115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199673494.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS12085Primary locus identifier stored in the genes table.
Old locus tagJDS87_12115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000013.1Sequence record reported by the local genomic context database.
Genomic interval110 657-112 033 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 017-112 033 ntGCF_016483475::NZ_JAEHBV010000013.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000013.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000013.1All displayed genes belong to this local TCS context.
Neighborhood span110 017-112 033 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 017 nt112 033 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS12080GCF_016483475#JDS87_RS12080
RROmpR
110 017-110 664 nt · Forward (+)
JDS87_RS12085GCF_016483475#JDS87_RS12085
HKClassicCurrent focus
110 657-112 033 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS12085The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1865184
Simplified PFAM architecture for HKOC_1865184
PFAM domain coverage: 202 / 458 aa (44.1%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-441]
- Domain count: 3
- Matched identifier: HKOC_1865184
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-441
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS12085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key