1 Response_reg#1
6-114 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:6:8.17e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS09795
Response regulator OmpR family
Bacillus cereus · GCF_016483475
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483475#JDS87_RS09795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 220 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-218 aa · 70 aa · 31.8% of protein
Raw token
Trans_reg_C:149:3.01e-28:218:75:77- Raw architecture: Response_reg:6:8.17e-32:114:111:111#Trans_reg_C:149:3.01e-28:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483475::NZ_JAEHBV010000010.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span99779-100441Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_09825RefSeq proteinWP_199673108.1
Context group ID
GCF_016483475::NZ_JAEHBV010000010.1::G00007Context members
JDS87_RS09795
Partner locus tags
JDS87_RS09795
Partner old locus tags
JDS87_09825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199673108.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS09795Primary locus identifier stored in the genes table.
Old locus tagJDS87_09825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000010.1Sequence record reported by the local genomic context database.
Genomic interval99 779-100 441 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span99 779-100 441 ntGCF_016483475::NZ_JAEHBV010000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000010.1All displayed genes belong to this local TCS context.
Neighborhood span99 779-100 441 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 779 nt100 441 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS87_RS09795GCF_016483475#JDS87_RS09795
RROmpRCurrent focus
99 779-100 441 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS09795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1739989
Simplified PFAM architecture for RROC_1739989
PFAM domain coverage: 177 / 220 aa (80.5%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[149-217]
- Domain count: 2
- Matched identifier: RROC_1739989
- Positioned domains: Response_reg 6-113 ; Trans_reg_C 149-217
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS09795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key