1 PocR#1
7-75 aa · 69 aa · 11.6% of protein
Raw token
PocR:7:0.000000248:75:102:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS02950
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483475#JDS87_RS02950Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage442 / 596 aa (74.2%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation5 items
2 PAS#2
132-234 aa · 103 aa · 17.3% of protein
Raw token
PAS:132:0.0000000061:234:108:1133 PAS_4#3
255-358 aa · 104 aa · 17.4% of protein
Raw token
PAS_4:255:0.000000000000081:358:109:1104 HisKA#4
372-434 aa · 63 aa · 10.6% of protein
Raw token
HisKA:372:0.000000000000327:434:63:645 HATPase_c#5
479-581 aa · 103 aa · 17.3% of protein
Raw token
HATPase_c:479:4.9e-24:581:107:109- Raw architecture: PocR:7:0.000000248:75:102:162#PAS:132:0.0000000061:234:108:113#PAS_4:255:0.000000000000081:358:109:110#HisKA:372:0.000000000000327:434:63:64#HATPase_c:479:4.9e-24:581:107:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483475::NZ_JAEHBV010000003.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span32001-33791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_02965RefSeq proteinWP_199672193.1
Context group ID
GCF_016483475::NZ_JAEHBV010000003.1::G00037Context members
JDS87_RS02950
Partner locus tags
JDS87_RS02950
Partner old locus tags
JDS87_02965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199672193.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS02950Primary locus identifier stored in the genes table.
Old locus tagJDS87_02965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000003.1Sequence record reported by the local genomic context database.
Genomic interval32 001-33 791 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 001-33 791 ntGCF_016483475::NZ_JAEHBV010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span32 001-33 791 nt1 791 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 001 nt33 791 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS87_RS02950GCF_016483475#JDS87_RS02950
HKClassicCurrent focus
32 001-33 791 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS02950The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1076434
Simplified PFAM architecture for HKOC_1076434
PFAM domain coverage: 340 / 596 aa (57.0%)
1 aa596 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[132-202] | PAS_4[255-358] | HisKA[373-433] | HATPase_c[479-582]
- Domain count: 4
- Matched identifier: HKOC_1076434
- Positioned domains: PAS 132-202 ; PAS_4 255-358 ; HisKA 373-433 ; HATPase_c 479-582
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS02950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key