1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:2.4e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS01255
Response regulator NarL family
Bacillus cereus · GCF_016483475
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS01255Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:3.8e-18:205:54:58- Raw architecture: Response_reg:5:2.4e-28:116:113:111#HTH_LUXR:152:3.8e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span252881-254624Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_01265RefSeq proteinWP_199671795.1
Context group ID
GCF_016483475::NZ_JAEHBV010000001.1::G00005Context members
JDS87_RS01250JDS87_RS01255
Partner locus tags
JDS87_RS01250JDS87_RS01255
Partner old locus tags
JDS87_01260JDS87_01265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199671795.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS01255Primary locus identifier stored in the genes table.
Old locus tagJDS87_01265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000001.1Sequence record reported by the local genomic context database.
Genomic interval253 986-254 624 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span252 881-254 624 ntGCF_016483475::NZ_JAEHBV010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span252 881-254 624 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 881 nt254 624 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS01250GCF_016483475#JDS87_RS01250
HKClassic
252 881-253 981 nt · Reverse (-)
JDS87_RS01255GCF_016483475#JDS87_RS01255
RRNarLCurrent focus
253 986-254 624 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS01255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1993663
Simplified PFAM architecture for RROC_1993663
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-205]
- Domain count: 2
- Matched identifier: RROC_1993663
- Positioned domains: Response_reg 5-116 ; GerE 151-205
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS01255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key