Gene detail

KFO37_RS01125

Histidine kinase, Classic

Clostridium paraputrificum · GCF_015668545

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength701 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_015668545#KFO37_RS01125Stable P2CS identifier used across views.

GenomeGCF_015668545Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium

Selected clusterHKOC_0767928Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_211134933.1 · MIST4 KFO37_RS01125RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

PAS_9PASHisKAHATPase_c

Protein length701 aaLength used to scale native and Biotite-like views.

Annotated domains44 with usable coordinates.

Domain coverage386 / 701 aa (55.1%)Merged over positioned domains only.

Domain description1 PAS_9,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa701 aa

Domain-by-domain annotation4 items

1 PAS_9#1

29-125 aa · 97 aa · 13.8% of protein

Raw tokenPAS_9:29:0.000000198:125:97:102

2 PAS#2

318-421 aa · 104 aa · 14.8% of protein

Raw tokenPAS:318:0.0000561:421:110:113

3 HisKA#3

440-510 aa · 71 aa · 10.1% of protein

Raw tokenHisKA:440:5.86e-16:510:71:64

4 HATPase_c#4

557-670 aa · 114 aa · 16.3% of protein

Raw tokenHATPase_c:557:2.3e-29:670:114:109

Raw architecture: PAS_9:29:0.000000198:125:97:102#PAS:318:0.0000561:421:110:113#HisKA:440:5.86e-16:510:71:64#HATPase_c:557:2.3e-29:670:114:109
Domain description: 1 PAS_9,1 PAS,1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_015668545::NZ_JADPFS010000002.1::G00019

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span24323-26428Genomic interval covered by the local TCS group.

Identifiers

RefSeq proteinWP_211134933.1

Context group IDGCF_015668545::NZ_JADPFS010000002.1::G00019

Context members

KFO37_RS01125

Partner locus tags

KFO37_RS01125

Partner protein IDs

WP_211134933.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_211134933.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagKFO37_RS01125Primary locus identifier stored in the genes table.

Old locus tagUnavailableNo previous locus tag available for this gene.

Contig / repliconNZ_JADPFS010000002.1Sequence record reported by the local genomic context database.

Genomic interval24 323-26 428 nt2 106 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span24 323-26 428 ntGCF_015668545::NZ_JADPFS010000002.1::G00019

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_015668545::NZ_JADPFS010000002.1::G00019

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JADPFS010000002.1All displayed genes belong to this local TCS context.

Neighborhood span24 323-26 428 nt2 106 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

24 323 nt26 428 nt

+-KFO37_RS01125

Neighborhood gene cards

1 gene in the current local neighborhood.

KFO37_RS01125GCF_015668545#KFO37_RS01125

HKClassicCurrent focus

24 323-26 428 nt · Reverse (-)

RefSeq WP_211134933.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0767928HK

Run 61 sequencesid 100%cov 80%

PFAM PAS_9 + PAS_9 + HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_0767928Run 6 · HK · 1 sequences

Representative sequenceGCF_015668545#KFO37_RS01125The current gene is the representative for this cluster.

PFAM architecturePAS_9 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0767928

Simplified PFAM architecture for HKOC_0767928

PFAM domain coverage: 334 / 701 aa (47.6%)

1 aa701 aa

PAS_9PAS_9HisKAHATPase_c

Simplified architecture: PAS_9 + PAS_9 + HisKA + HATPase_c
Raw architecture: PAS_9[29-124] | PAS_9[330-383] | HisKA[440-510] | HATPase_c[557-669]
Domain count: 4
Matched identifier: HKOC_0767928
Positioned domains: PAS_9 29-124 ; PAS_9 330-383 ; HisKA 440-510 ; HATPase_c 557-669

Cluster members and taxonomy

Representative gene: GCF_015668545#KFO37_RS01125

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 29 363 · GCF_015668545

AssemblyASM1566854v1 · Scaffoldhaploid

Genome composition3 460 293 bp · 30,0% GCClostridium paraputrificum

Signal transduction countsGenes 73 · HK 39 · RR 32CheA 1 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key