1 PAS_4#1
29-123 aa · 95 aa · 13.6% of protein
Raw token
PAS_4:29:0.0000676:123:103:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KFO37_RS01065
Histidine kinase, Classic
Clostridium paraputrificum · GCF_015668545
ClassHKTypeClassicLength697 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015668545#KFO37_RS01065Stable P2CS identifier used across views.
GenomeGCF_015668545Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PAS_4PASHisKAHATPase_c
Protein length697 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage383 / 697 aa (54.9%)Merged over positioned domains only.
Domain description1 PAS_4,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa697 aa
Domain-by-domain annotation4 items
2 PAS#2
308-415 aa · 108 aa · 15.5% of protein
Raw token
PAS:308:0.0000000725:415:113:1133 HisKA#3
437-507 aa · 71 aa · 10.2% of protein
Raw token
HisKA:437:0.00000000000000166:507:71:644 HATPase_c#4
554-662 aa · 109 aa · 15.6% of protein
Raw token
HATPase_c:554:5.75e-32:662:109:109- Raw architecture: PAS_4:29:0.0000676:123:103:110#PAS:308:0.0000000725:415:113:113#HisKA:437:0.00000000000000166:507:71:64#HATPase_c:554:5.75e-32:662:109:109
- Domain description: 1 PAS_4,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015668545::NZ_JADPFS010000002.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span11493-13586Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668545::NZ_JADPFS010000002.1::G00018Context members
KFO37_RS01065
Partner locus tags
KFO37_RS01065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_111919343.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKFO37_RS01065Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPFS010000002.1Sequence record reported by the local genomic context database.
Genomic interval11 493-13 586 nt2 094 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 493-13 586 ntGCF_015668545::NZ_JADPFS010000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668545::NZ_JADPFS010000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPFS010000002.1All displayed genes belong to this local TCS context.
Neighborhood span11 493-13 586 nt2 094 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 493 nt13 586 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KFO37_RS01065GCF_015668545#KFO37_RS01065
HKClassicCurrent focus
11 493-13 586 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668545#KFO37_RS01065The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0776466
Simplified PFAM architecture for HKOC_0776466
PFAM domain coverage: 287 / 697 aa (41.2%)
1 aa697 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[309-414] | HisKA[437-507] | HATPase_c[554-663]
- Domain count: 3
- Matched identifier: HKOC_0776466
- Positioned domains: PAS 309-414 ; HisKA 437-507 ; HATPase_c 554-663
Cluster members and taxonomy
Representative gene: GCF_015668545#KFO37_RS01065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_015668545
AssemblyASM1566854v1 · Scaffoldhaploid
Genome composition3 460 293 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 39 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key