1 Response_reg#1
4-116 aa · 113 aa · 21.9% of protein
Raw token
Response_reg:4:3.07e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS10380
Response regulator, unclassified
Blautia wexlerae · GCF_015667495
ClassRRTypeunclassifiedLength517 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667495#I4V76_RS10380Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length517 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 517 aa (37.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa517 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
423-463 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:423:0.00000000000204:463:41:423 HTH_AraC#3
477-514 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:477:0.000000266:514:38:42- Raw architecture: Response_reg:4:3.07e-28:116:113:111#HTH_AraC:423:0.00000000000204:463:41:42#HTH_AraC:477:0.000000266:514:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667495::NZ_JADPEC010000020.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11172-14551Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000020.1::G00026Context members
I4V76_RS10380I4V76_RS10385
Partner locus tags
I4V76_RS10380I4V76_RS10385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_196027615.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS10380Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000020.1Sequence record reported by the local genomic context database.
Genomic interval11 172-12 725 nt1 554 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 172-14 551 ntGCF_015667495::NZ_JADPEC010000020.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000020.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000020.1All displayed genes belong to this local TCS context.
Neighborhood span11 172-14 551 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 172 nt14 551 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V76_RS10380GCF_015667495#I4V76_RS10380
RRunclassifiedCurrent focus
11 172-12 725 nt · Forward (+)
I4V76_RS10385GCF_015667495#I4V76_RS10385
HKClassic
12 869-14 551 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667495#I4V76_RS10380The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0132292
Simplified PFAM architecture for RROC_0132292
PFAM domain coverage: 194 / 517 aa (37.5%)
1 aa517 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[423-463] | HTH_AraC[475-514]
- Domain count: 3
- Matched identifier: RROC_0132292
- Positioned domains: Response_reg 4-116 ; HTH_AraC 423-463 ; HTH_AraC 475-514
Cluster members and taxonomy
Representative gene: GCF_015667495#I4V76_RS10380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key