1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:3.17e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS07025
Response regulator OmpR family
Blautia wexlerae · GCF_015667495
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667495#I4V76_RS07025Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:1.33e-29:228:77:77- Raw architecture: Response_reg:4:3.17e-37:113:111:111#Trans_reg_C:152:1.33e-29:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667495::NZ_JADPEC010000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30258-33710Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000011.1::G00004Context members
I4V76_RS07025I4V76_RS07030
Partner locus tags
I4V76_RS07025I4V76_RS07030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_196027532.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS07025Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000011.1Sequence record reported by the local genomic context database.
Genomic interval30 258-30 953 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 258-33 710 ntGCF_015667495::NZ_JADPEC010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000011.1All displayed genes belong to this local TCS context.
Neighborhood span30 258-33 710 nt3 453 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 258 nt33 710 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V76_RS07025GCF_015667495#I4V76_RS07025
RROmpRCurrent focus
30 258-30 953 nt · Forward (+)
I4V76_RS07030GCF_015667495#I4V76_RS07030
HKClassic
31 038-33 710 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667495#I4V76_RS07025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1175339
Simplified PFAM architecture for RROC_1175339
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1175339
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_015667495#I4V76_RS07025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key