1 Response_reg#1
4-112 aa · 109 aa · 47.6% of protein
Raw token
Response_reg:4:5.1e-37:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS03035
Response regulator OmpR family
Blautia wexlerae · GCF_015667495
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667495#I4V76_RS03035Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 229 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:3.74e-31:225:73:77- Raw architecture: Response_reg:4:5.1e-37:112:110:111#Trans_reg_C:153:3.74e-31:225:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667495::NZ_JADPEC010000004.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78676-80284Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000004.1::G00056Context members
I4V76_RS03030I4V76_RS03035
Partner locus tags
I4V76_RS03030I4V76_RS03035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055158095.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS03035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000004.1Sequence record reported by the local genomic context database.
Genomic interval79 595-80 284 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 676-80 284 ntGCF_015667495::NZ_JADPEC010000004.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000004.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000004.1All displayed genes belong to this local TCS context.
Neighborhood span78 676-80 284 nt1 609 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 676 nt80 284 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V76_RS03030GCF_015667495#I4V76_RS03030
HKClassic
78 676-79 581 nt · Reverse (-)
I4V76_RS03035GCF_015667495#I4V76_RS03035
RROmpRCurrent focus
79 595-80 284 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405415#ARA37_RS12140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253461
Simplified PFAM architecture for RROC_1253461
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1253461
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_001405415#ARA37_RS12140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key