1 Response_reg#1
4-100 aa · 97 aa · 83.6% of protein
Raw token
Response_reg:4:0.0000000000045:100:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I25_RS10345
Response regulator, CheY family
Mediterraneibacter gnavus · GCF_015561245
ClassRRTypeCheYLength116 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015561245#I2I25_RS10345Stable P2CS identifier used across views.
GenomeGCF_015561245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length116 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage97 / 116 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa116 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000045:100:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015561245::NZ_JADMTD010000012.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span37191-37541Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015561245::NZ_JADMTD010000012.1::G00007Context members
I2I25_RS10345
Partner locus tags
I2I25_RS10345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_202184078.1Primary protein accession used for annex mappings.
UniProt accessionQ93JP9Primary UniProt accession resolved in the annex database.
UniProt IDQ93JP9_MEDGNDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I25_RS10345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMTD010000012.1Sequence record reported by the local genomic context database.
Genomic interval37 191-37 541 nt351 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 191-37 541 ntGCF_015561245::NZ_JADMTD010000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015561245::NZ_JADMTD010000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMTD010000012.1All displayed genes belong to this local TCS context.
Neighborhood span37 191-37 541 nt351 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 191 nt37 541 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2I25_RS10345GCF_015561245#I2I25_RS10345
RRCheYCurrent focus
37 191-37 541 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561245#I2I25_RS10345The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2463992
Simplified PFAM architecture for RROC_2463992
PFAM domain coverage: 97 / 116 aa (83.6%)
1 aa116 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-100]
- Domain count: 1
- Matched identifier: RROC_2463992
- Positioned domains: Response_reg 4-100
Cluster members and taxonomy
Representative gene: GCF_015561245#I2I25_RS10345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015561245
AssemblyASM1556124v1 · Scaffoldhaploid
Genome composition4 015 667 bp · 41,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key