1 Response_reg#1
14-117 aa · 104 aa · 41.4% of protein
Raw token
Response_reg:14:8.73e-18:117:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS23070
Response regulator LytTR family
[Clostridium] symbiosum · GCF_015560355
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_015560355#I2I31_RS23070Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 251 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-243 aa · 94 aa · 37.5% of protein
Raw token
LytTR:150:0.0000000000287:243:101:98- Raw architecture: Response_reg:14:8.73e-18:117:106:111#LytTR:150:0.0000000000287:243:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_015560355::NZ_JADMRR010000142.1::G00011
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span3589-6618Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000142.1::G00011Context members
I2I31_RS23060I2I31_RS23065I2I31_RS23070
Partner locus tags
I2I31_RS23060I2I31_RS23065I2I31_RS23070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003498134.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS23070Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000142.1Sequence record reported by the local genomic context database.
Genomic interval5 863-6 618 nt756 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 589-6 618 ntGCF_015560355::NZ_JADMRR010000142.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000142.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000142.1All displayed genes belong to this local TCS context.
Neighborhood span3 589-6 618 nt3 030 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 589 nt6 618 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
I2I31_RS23060GCF_015560355#I2I31_RS23060
RRunclassified
3 589-4 218 nt · Reverse (-)
I2I31_RS23065GCF_015560355#I2I31_RS23065
HKClassic
4 199-5 659 nt · Reverse (-)
I2I31_RS23070GCF_015560355#I2I31_RS23070
RRLytTRCurrent focus
5 863-6 618 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS11540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0715731
Simplified PFAM architecture for RROC_0715731
PFAM domain coverage: 197 / 251 aa (78.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-117] | LytTR[150-243]
- Domain count: 2
- Matched identifier: RROC_0715731
- Positioned domains: Response_reg 15-117 ; LytTR 150-243
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key