1 PAS_3#1
33-101 aa · 69 aa · 6.6% of protein
Raw token
PAS_3:33:0.00000845:101:78:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS02800
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_015560355
ClassHKTypeHybridLength1053 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_015560355#I2I31_RS02800Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1053 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage453 / 1053 aa (43.0%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1053 aa
Domain-by-domain annotation5 items
2 PAS_3#2
160-246 aa · 87 aa · 8.3% of protein
Raw token
PAS_3:160:0.0000000000536:246:88:893 HisKA#3
671-735 aa · 65 aa · 6.2% of protein
Raw token
HisKA:671:0.0000000000000105:735:65:644 HATPase_c#4
784-898 aa · 115 aa · 10.9% of protein
Raw token
HATPase_c:784:5.55e-31:898:116:1095 Response_reg#5
929-1045 aa · 117 aa · 11.1% of protein
Raw token
Response_reg:929:3.87e-26:1045:117:111- Raw architecture: PAS_3:33:0.00000845:101:78:89#PAS_3:160:0.0000000000536:246:88:89#HisKA:671:0.0000000000000105:735:65:64#HATPase_c:784:5.55e-31:898:116:109#Response_reg:929:3.87e-26:1045:117:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_015560355::NZ_JADMRR010000004.1::G00046
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span104480-113823Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000004.1::G00046Context members
I2I31_RS02800I2I31_RS02805I2I31_RS02810
Partner locus tags
I2I31_RS02800I2I31_RS02805I2I31_RS02810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150028428.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AQM3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AQM3_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS02800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000004.1Sequence record reported by the local genomic context database.
Genomic interval104 480-107 641 nt3 162 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 480-113 823 ntGCF_015560355::NZ_JADMRR010000004.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000004.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000004.1All displayed genes belong to this local TCS context.
Neighborhood span104 480-113 823 nt9 344 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 480 nt113 823 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
I2I31_RS02800GCF_015560355#I2I31_RS02800
HKHybridCurrent focus
104 480-107 641 nt · Reverse (-)
I2I31_RS02805GCF_015560355#I2I31_RS02805
HKHybrid
107 654-111 235 nt · Reverse (-)
I2I31_RS02810GCF_015560355#I2I31_RS02810
RRPleD_VieA
111 241-113 823 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS20150Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0257231
Simplified PFAM architecture for HKOC_0257231
PFAM domain coverage: 381 / 1053 aa (36.2%)
1 aa1053 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[160-244] | HisKA[671-735] | HATPase_c[784-898] | Response_reg[929-1044]
- Domain count: 4
- Matched identifier: HKOC_0257231
- Positioned domains: PAS_3 160-244 ; HisKA 671-735 ; HATPase_c 784-898 ; Response_reg 929-1044
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS20150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key