1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:7.11e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS22880
Response regulator OmpR family
[Clostridium] symbiosum · GCF_015560355
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015560355#I2I31_RS22880Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-222 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:148:1.08e-26:222:76:77- Raw architecture: Response_reg:4:7.11e-24:113:111:111#Trans_reg_C:148:1.08e-26:222:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015560355::NZ_JADMRR010000138.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4148-5911Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000138.1::G00008Context members
I2I31_RS22880I2I31_RS22885
Partner locus tags
I2I31_RS22880I2I31_RS22885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003500757.1Primary protein accession used for annex mappings.
UniProt accessionE7GN99Primary UniProt accession resolved in the annex database.
UniProt IDE7GN99_CLOS6Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS22880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000138.1Sequence record reported by the local genomic context database.
Genomic interval4 148-4 819 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 148-5 911 ntGCF_015560355::NZ_JADMRR010000138.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000138.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000138.1All displayed genes belong to this local TCS context.
Neighborhood span4 148-5 911 nt1 764 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 148 nt5 911 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2I31_RS22880GCF_015560355#I2I31_RS22880
RROmpRCurrent focus
4 148-4 819 nt · Forward (+)
I2I31_RS22885GCF_015560355#I2I31_RS22885
HKClassic
4 835-5 911 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS12250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587785
Simplified PFAM architecture for RROC_1587785
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1587785
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS12250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key