1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:7.62e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS20185
Response regulator OmpR family
[Clostridium] symbiosum · GCF_015560355
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015560355#I2I31_RS20185Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:153:1.92e-28:229:77:77- Raw architecture: Response_reg:6:7.62e-37:115:111:111#Trans_reg_C:153:1.92e-28:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015560355::NZ_JADMRR010000096.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3610-6988Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000096.1::G00069Context members
I2I31_RS20185I2I31_RS20190
Partner locus tags
I2I31_RS20185I2I31_RS20190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003510559.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AYZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AYZ4_CLOSYDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS20185Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000096.1Sequence record reported by the local genomic context database.
Genomic interval3 610-4 308 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 610-6 988 ntGCF_015560355::NZ_JADMRR010000096.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000096.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000096.1All displayed genes belong to this local TCS context.
Neighborhood span3 610-6 988 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 610 nt6 988 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2I31_RS20185GCF_015560355#I2I31_RS20185
RROmpRCurrent focus
3 610-4 308 nt · Reverse (-)
I2I31_RS20190GCF_015560355#I2I31_RS20190
HKClassic
4 301-6 988 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS19130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120036
Simplified PFAM architecture for RROC_1120036
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1120036
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS19130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key