1 Response_reg#1
145-257 aa · 113 aa · 27.6% of protein
Raw token
Response_reg:145:6.15e-23:257:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS15535
Response regulator, FrzZ family
[Clostridium] symbiosum · GCF_015560355
ClassRRTypeFrzZLength409 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015560355#I2I31_RS15535Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage232 / 409 aa (56.7%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 Response_reg#2
286-404 aa · 119 aa · 29.1% of protein
Raw token
Response_reg:286:1.02e-30:404:119:111- Raw architecture: Response_reg:145:6.15e-23:257:115:111#Response_reg:286:1.02e-30:404:119:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015560355::NZ_JADMRR010000053.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span452-1681Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000053.1::G00048Context members
I2I31_RS15535
Partner locus tags
I2I31_RS15535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003499122.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS15535Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000053.1Sequence record reported by the local genomic context database.
Genomic interval452-1 681 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span452-1 681 ntGCF_015560355::NZ_JADMRR010000053.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000053.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000053.1All displayed genes belong to this local TCS context.
Neighborhood span452-1 681 nt1 230 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
452 nt1 681 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2I31_RS15535GCF_015560355#I2I31_RS15535
RRFrzZCurrent focus
452-1 681 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS19600Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c + Response_reg + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0371445
Simplified PFAM architecture for RROC_0371445
PFAM domain coverage: 325 / 409 aa (79.5%)
1 aa409 aa
HATPase_cResponse_regResponse_reg
- Simplified architecture: HATPase_c + Response_reg + Response_reg
- Raw architecture: HATPase_c[34-126] | Response_reg[145-258] | Response_reg[286-403]
- Domain count: 3
- Matched identifier: RROC_0371445
- Positioned domains: HATPase_c 34-126 ; Response_reg 145-258 ; Response_reg 286-403
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS19600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key