1 Response_reg#1
8-120 aa · 113 aa · 39.2% of protein
Raw token
Response_reg:8:1.99e-26:120:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS07780
Response regulator, unclassified
[Clostridium] symbiosum · GCF_015560355
ClassRRTypeunclassifiedLength288 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015560355#I2I31_RS07780Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length288 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 288 aa (53.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa288 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
189-230 aa · 42 aa · 14.6% of protein
Raw token
HTH_AraC:189:0.00000000943:230:42:42- Raw architecture: Response_reg:8:1.99e-26:120:113:111#HTH_AraC:189:0.00000000943:230:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015560355::NZ_JADMRR010000015.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51711-54340Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000015.1::G00016Context members
I2I31_RS07780I2I31_RS07785
Partner locus tags
I2I31_RS07780I2I31_RS07785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003508117.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS07780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000015.1Sequence record reported by the local genomic context database.
Genomic interval51 711-52 577 nt867 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 711-54 340 ntGCF_015560355::NZ_JADMRR010000015.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000015.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000015.1All displayed genes belong to this local TCS context.
Neighborhood span51 711-54 340 nt2 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 711 nt54 340 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2I31_RS07780GCF_015560355#I2I31_RS07780
RRunclassifiedCurrent focus
51 711-52 577 nt · Reverse (-)
I2I31_RS07785GCF_015560355#I2I31_RS07785
HKClassic
52 580-54 340 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS09240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0588425
Simplified PFAM architecture for RROC_0588425
PFAM domain coverage: 192 / 288 aa (66.7%)
1 aa288 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[8-120] | HTH_18[202-280]
- Domain count: 2
- Matched identifier: RROC_0588425
- Positioned domains: Response_reg 8-120 ; Response_reg 8-120 ; HTH_18 202-280 ; HTH_18 202-280
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS09240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key