1 Response_reg#1
6-110 aa · 105 aa · 19.1% of protein
Raw token
Response_reg:6:1.2e-29:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS06890
Response regulator, RpfG family
[Clostridium] symbiosum · GCF_015560355
ClassRRTypeRpfGLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015560355#I2I31_RS06890Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 550 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HD#2
167-300 aa · 134 aa · 24.4% of protein
Raw token
HD:167:0.0000000000000419:300:134:1103 GGDEF#3
390-532 aa · 143 aa · 26.0% of protein
Raw token
GGDEF:390:6.47e-39:532:156:160- Raw architecture: Response_reg:6:1.2e-29:110:106:111#HD:167:0.0000000000000419:300:134:110#GGDEF:390:6.47e-39:532:156:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015560355::NZ_JADMRR010000013.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46926-51523Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000013.1::G00010Context members
I2I31_RS06880I2I31_RS06890
Partner locus tags
I2I31_RS06880I2I31_RS06890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202185205.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS06890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000013.1Sequence record reported by the local genomic context database.
Genomic interval49 871-51 523 nt1 653 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 926-51 523 ntGCF_015560355::NZ_JADMRR010000013.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000013.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000013.1All displayed genes belong to this local TCS context.
Neighborhood span46 926-51 523 nt4 598 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 926 nt51 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2I31_RS06880GCF_015560355#I2I31_RS06880
HKHybrid
46 926-49 484 nt · Reverse (-)
I2I31_RS06890GCF_015560355#I2I31_RS06890
RRRpfGCurrent focus
49 871-51 523 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015560355#I2I31_RS06890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0074077
Simplified PFAM architecture for RROC_0074077
PFAM domain coverage: 377 / 550 aa (68.5%)
1 aa550 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-112] | HD_5[198-323] | GGDEF[390-533]
- Domain count: 3
- Matched identifier: RROC_0074077
- Positioned domains: Response_reg 6-112 ; HD_5 198-323 ; GGDEF 390-533
Cluster members and taxonomy
Representative gene: GCF_015560355#I2I31_RS06890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key