1 Response_reg#1
7-120 aa · 114 aa · 13.3% of protein
Raw token
Response_reg:7:1.45e-27:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS02810
Response regulator, PleD_VieA family
[Clostridium] symbiosum · GCF_015560355
ClassRRTypePleD_VieALength860 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_015560355#I2I31_RS02810Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length860 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage694 / 860 aa (80.7%)Merged over positioned domains only.
Domain description2 Response_reg,2 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa860 aa
Domain-by-domain annotation5 items
2 GGDEF#2
137-225 aa · 89 aa · 10.3% of protein
Raw token
GGDEF:137:0.00000000000000182:225:91:1603 EAL#3
309-539 aa · 231 aa · 26.9% of protein
Raw token
EAL:309:9.42e-70:539:231:2354 Response_reg#4
575-685 aa · 111 aa · 12.9% of protein
Raw token
Response_reg:575:0.00000000000286:685:113:1115 GGDEF#5
705-853 aa · 149 aa · 17.3% of protein
Raw token
GGDEF:705:1.52e-32:853:160:160- Raw architecture: Response_reg:7:1.45e-27:120:115:111#GGDEF:137:0.00000000000000182:225:91:160#EAL:309:9.42e-70:539:231:235#Response_reg:575:0.00000000000286:685:113:111#GGDEF:705:1.52e-32:853:160:160
- Domain description: 2 Response_reg,2 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_015560355::NZ_JADMRR010000004.1::G00046
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span104480-113823Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000004.1::G00046Context members
I2I31_RS02800I2I31_RS02805I2I31_RS02810
Partner locus tags
I2I31_RS02800I2I31_RS02805I2I31_RS02810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_156684466.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3BWE0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3BWE0_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS02810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000004.1Sequence record reported by the local genomic context database.
Genomic interval111 241-113 823 nt2 583 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 480-113 823 ntGCF_015560355::NZ_JADMRR010000004.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000004.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000004.1All displayed genes belong to this local TCS context.
Neighborhood span104 480-113 823 nt9 344 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 480 nt113 823 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
I2I31_RS02800GCF_015560355#I2I31_RS02800
HKHybrid
104 480-107 641 nt · Reverse (-)
I2I31_RS02805GCF_015560355#I2I31_RS02805
HKHybrid
107 654-111 235 nt · Reverse (-)
I2I31_RS02810GCF_015560355#I2I31_RS02810
RRPleD_VieACurrent focus
111 241-113 823 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015560355#I2I31_RS02810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL + Response_reg + GGDEF5 domains in the representative PFAM annotation.
PFAM architecture for RROC_0012214
Simplified PFAM architecture for RROC_0012214
PFAM domain coverage: 747 / 860 aa (86.9%)
1 aa860 aa
Response_regGGDEFEALResponse_regGGDEF
- Simplified architecture: Response_reg + GGDEF + EAL + Response_reg + GGDEF
- Raw architecture: Response_reg[7-119] | GGDEF[136-278] | EAL[307-539] | Response_reg[575-685] | GGDEF[706-852]
- Domain count: 5
- Matched identifier: RROC_0012214
- Positioned domains: Response_reg 7-119 ; GGDEF 136-278 ; EAL 307-539 ; Response_reg 575-685 ; GGDEF 706-852
Cluster members and taxonomy
Representative gene: GCF_015560355#I2I31_RS02810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key