1 Response_reg#1
4-119 aa · 116 aa · 46.0% of protein
Raw token
Response_reg:4:5.33e-16:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2I31_RS01540
Response regulator LytTR family
[Clostridium] symbiosum · GCF_015560355
ClassRRTypeLytTRLength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015560355#I2I31_RS01540Stable P2CS identifier used across views.
GenomeGCF_015560355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage221 / 252 aa (87.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-246 aa · 105 aa · 41.7% of protein
Raw token
LytTR:142:5.02e-21:246:110:98- Raw architecture: Response_reg:4:5.33e-16:119:118:111#LytTR:142:5.02e-21:246:110:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015560355::NZ_JADMRR010000003.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11708-12466Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560355::NZ_JADMRR010000003.1::G00037Context members
I2I31_RS01540
Partner locus tags
I2I31_RS01540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117633580.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NX99Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NX99_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2I31_RS01540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRR010000003.1Sequence record reported by the local genomic context database.
Genomic interval11 708-12 466 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 708-12 466 ntGCF_015560355::NZ_JADMRR010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560355::NZ_JADMRR010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRR010000003.1All displayed genes belong to this local TCS context.
Neighborhood span11 708-12 466 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 708 nt12 466 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2I31_RS01540GCF_015560355#I2I31_RS01540
RRLytTRCurrent focus
11 708-12 466 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS31975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0705516
Simplified PFAM architecture for RROC_0705516
PFAM domain coverage: 182 / 252 aa (72.2%)
1 aa252 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[181-246]
- Domain count: 2
- Matched identifier: RROC_0705516
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 181-246 ; LytTR 181-246
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS31975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015560355
AssemblyASM1556035v1 · Scaffoldhaploid
Genome composition5 439 051 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 115 · HK 57 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key