1 Response_reg#1
5-114 aa · 110 aa · 71.4% of protein
Raw token
Response_reg:5:7.18e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G75_RS06040
Response regulator, CheY family
Roseburia faecis · GCF_015558055
ClassRRTypeCheYLength154 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015558055#I2G75_RS06040Stable P2CS identifier used across views.
GenomeGCF_015558055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length154 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 154 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa154 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:7.18e-40:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015558055::NZ_JADNPM010000006.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110954-112867Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015558055::NZ_JADNPM010000006.1::G00068Context members
I2G75_RS06035I2G75_RS06040
Partner locus tags
I2G75_RS06035I2G75_RS06040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330615759.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G75_RS06040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNPM010000006.1Sequence record reported by the local genomic context database.
Genomic interval112 403-112 867 nt465 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 954-112 867 ntGCF_015558055::NZ_JADNPM010000006.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015558055::NZ_JADNPM010000006.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNPM010000006.1All displayed genes belong to this local TCS context.
Neighborhood span110 954-112 867 nt1 914 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 954 nt112 867 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G75_RS06035GCF_015558055#I2G75_RS06035
HKClassic
110 954-112 180 nt · Reverse (-)
I2G75_RS06040GCF_015558055#I2G75_RS06040
RRCheYCurrent focus
112 403-112 867 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015558055#I2G75_RS06040The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2218346
Simplified PFAM architecture for RROC_2218346
PFAM domain coverage: 109 / 154 aa (70.8%)
1 aa154 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-113]
- Domain count: 1
- Matched identifier: RROC_2218346
- Positioned domains: Response_reg 5-113
Cluster members and taxonomy
Representative gene: GCF_015558055#I2G75_RS06040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015558055
AssemblyASM1555805v1 · Scaffoldhaploid
Genome composition3 915 225 bp · 42,5% GCRoseburia faecis
Signal transduction countsGenes 117 · HK 49 · RR 66CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key