1 Response_reg#1
5-114 aa · 110 aa · 31.1% of protein
Raw token
Response_reg:5:2.26e-22:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G75_RS01580
Response regulator, CheB family
Roseburia faecis · GCF_015558055
ClassRRTypeCheBLength354 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015558055#I2G75_RS01580Stable P2CS identifier used across views.
GenomeGCF_015558055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage293 / 354 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
165-347 aa · 183 aa · 51.7% of protein
Raw token
CheB_methylest:165:1.23e-78:347:183:177- Raw architecture: Response_reg:5:2.26e-22:114:110:111#CheB_methylest:165:1.23e-78:347:183:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015558055::NZ_JADNPM010000002.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24848-28010Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015558055::NZ_JADNPM010000002.1::G00038Context members
I2G75_RS01580I2G75_RS01585
Partner locus tags
I2G75_RS01580I2G75_RS01585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055263833.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G75_RS01580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNPM010000002.1Sequence record reported by the local genomic context database.
Genomic interval24 848-25 912 nt1 065 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 848-28 010 ntGCF_015558055::NZ_JADNPM010000002.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015558055::NZ_JADNPM010000002.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNPM010000002.1All displayed genes belong to this local TCS context.
Neighborhood span24 848-28 010 nt3 163 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 848 nt28 010 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G75_RS01580GCF_015558055#I2G75_RS01580
RRCheBCurrent focus
24 848-25 912 nt · Forward (+)
I2G75_RS01585GCF_015558055#I2G75_RS01585
HKCheA
25 914-28 010 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS14050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0471362
Simplified PFAM architecture for RROC_0471362
PFAM domain coverage: 291 / 354 aa (82.2%)
1 aa354 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[5-112] | CheB_methylest[165-347]
- Domain count: 2
- Matched identifier: RROC_0471362
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; CheB_methylest 165-347 ; CheB_methylest 165-347
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS14050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015558055
AssemblyASM1555805v1 · Scaffoldhaploid
Genome composition3 915 225 bp · 42,5% GCRoseburia faecis
Signal transduction countsGenes 117 · HK 49 · RR 66CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key