1 HisKA#1
188-248 aa · 61 aa · 15.1% of protein
Raw token
HisKA:188:0.00000000000000961:248:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G75_RS02835
Histidine kinase, Classic
Roseburia faecis · GCF_015558055
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015558055#I2G75_RS02835Stable P2CS identifier used across views.
GenomeGCF_015558055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 405 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-402 aa · 110 aa · 27.2% of protein
Raw token
HATPase_c:293:5.1e-20:402:111:109- Raw architecture: HisKA:188:0.00000000000000961:248:61:64#HATPase_c:293:5.1e-20:402:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015558055::NZ_JADNPM010000003.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16996-18889Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015558055::NZ_JADNPM010000003.1::G00046Context members
I2G75_RS02835I2G75_RS02840
Partner locus tags
I2G75_RS02835I2G75_RS02840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055264116.1Primary protein accession used for annex mappings.
UniProt accessionA0A173USX5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173USX5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G75_RS02835Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNPM010000003.1Sequence record reported by the local genomic context database.
Genomic interval16 996-18 213 nt1 218 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 996-18 889 ntGCF_015558055::NZ_JADNPM010000003.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015558055::NZ_JADNPM010000003.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNPM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span16 996-18 889 nt1 894 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 996 nt18 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G75_RS02835GCF_015558055#I2G75_RS02835
HKClassicCurrent focus
16 996-18 213 nt · Reverse (-)
I2G75_RS02840GCF_015558055#I2G75_RS02840
RROmpR
18 206-18 889 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS15615Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2398332
Simplified PFAM architecture for HKOC_2398332
PFAM domain coverage: 170 / 405 aa (42.0%)
1 aa405 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[187-247] | HATPase_c[293-401]
- Domain count: 2
- Matched identifier: HKOC_2398332
- Positioned domains: HisKA 187-247 ; HATPase_c 293-401
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS15615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015558055
AssemblyASM1555805v1 · Scaffoldhaploid
Genome composition3 915 225 bp · 42,5% GCRoseburia faecis
Signal transduction countsGenes 117 · HK 49 · RR 66CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key