1 HisKA#1
167-234 aa · 68 aa · 16.7% of protein
Raw token
HisKA:167:0.00000000000000653:234:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G75_RS06035
Histidine kinase, Classic
Roseburia faecis · GCF_015558055
ClassHKTypeClassicLength408 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015558055#I2G75_RS06035Stable P2CS identifier used across views.
GenomeGCF_015558055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length408 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 408 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa408 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
280-377 aa · 98 aa · 24.0% of protein
Raw token
HATPase_c:280:1.36e-21:377:98:109- Raw architecture: HisKA:167:0.00000000000000653:234:68:64#HATPase_c:280:1.36e-21:377:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015558055::NZ_JADNPM010000006.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110954-112867Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015558055::NZ_JADNPM010000006.1::G00068Context members
I2G75_RS06035I2G75_RS06040
Partner locus tags
I2G75_RS06035I2G75_RS06040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117830550.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KSS2Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KSS2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G75_RS06035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNPM010000006.1Sequence record reported by the local genomic context database.
Genomic interval110 954-112 180 nt1 227 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 954-112 867 ntGCF_015558055::NZ_JADNPM010000006.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015558055::NZ_JADNPM010000006.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNPM010000006.1All displayed genes belong to this local TCS context.
Neighborhood span110 954-112 867 nt1 914 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 954 nt112 867 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G75_RS06035GCF_015558055#I2G75_RS06035
HKClassicCurrent focus
110 954-112 180 nt · Reverse (-)
I2G75_RS06040GCF_015558055#I2G75_RS06040
RRCheY
112 403-112 867 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS02645Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2372804
Simplified PFAM architecture for HKOC_2372804
PFAM domain coverage: 164 / 408 aa (40.2%)
1 aa408 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[168-234] | HATPase_c[281-377]
- Domain count: 2
- Matched identifier: HKOC_2372804
- Positioned domains: HisKA 168-234 ; HATPase_c 281-377
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS02645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015558055
AssemblyASM1555805v1 · Scaffoldhaploid
Genome composition3 915 225 bp · 42,5% GCRoseburia faecis
Signal transduction countsGenes 117 · HK 49 · RR 66CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key