1 HAMP#1
199-267 aa · 69 aa · 13.9% of protein
Raw token
HAMP:199:0.00000000000000677:267:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G75_RS04000
Histidine kinase, Classic
Roseburia faecis · GCF_015558055
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015558055#I2G75_RS04000Stable P2CS identifier used across views.
GenomeGCF_015558055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 495 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 His_kinase#2
283-360 aa · 78 aa · 15.8% of protein
Raw token
His_kinase:283:8.82e-31:360:78:803 HATPase_c#3
382-484 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:382:0.000000000000361:484:105:109- Raw architecture: HAMP:199:0.00000000000000677:267:69:69#His_kinase:283:8.82e-31:360:78:80#HATPase_c:382:0.000000000000361:484:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015558055::NZ_JADNPM010000004.1::G00058
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18982-20469Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015558055::NZ_JADNPM010000004.1::G00058Context members
I2G75_RS04000
Partner locus tags
I2G75_RS04000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202193053.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G75_RS04000Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNPM010000004.1Sequence record reported by the local genomic context database.
Genomic interval18 982-20 469 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 982-20 469 ntGCF_015558055::NZ_JADNPM010000004.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015558055::NZ_JADNPM010000004.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNPM010000004.1All displayed genes belong to this local TCS context.
Neighborhood span18 982-20 469 nt1 488 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 982 nt20 469 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G75_RS04000GCF_015558055#I2G75_RS04000
HKClassicCurrent focus
18 982-20 469 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015558055#I2G75_RS04000The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1506455
Simplified PFAM architecture for HKOC_1506455
PFAM domain coverage: 234 / 495 aa (47.3%)
1 aa495 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[217-267] | His_kinase[283-360] | HATPase_c[381-485]
- Domain count: 3
- Matched identifier: HKOC_1506455
- Positioned domains: HAMP 217-267 ; His_kinase 283-360 ; HATPase_c 381-485
Cluster members and taxonomy
Representative gene: GCF_015558055#I2G75_RS04000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015558055
AssemblyASM1555805v1 · Scaffoldhaploid
Genome composition3 915 225 bp · 42,5% GCRoseburia faecis
Signal transduction countsGenes 117 · HK 49 · RR 66CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key