1 Response_reg#1
5-115 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:5:3.69e-30:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Fi14EGH31_RS13285
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_015097455
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015097455#Fi14EGH31_RS13285Stable P2CS identifier used across views.
GenomeGCF_015097455Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:147:1.96e-32:220:76:77- Raw architecture: Response_reg:5:3.69e-30:115:111:111#Trans_reg_C:147:1.96e-32:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015097455::NZ_AP024085.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2493978-2496351Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFi14EGH31_25620RefSeq proteinWP_117792785.1
Context group ID
GCF_015097455::NZ_AP024085.1::G00030Context members
Fi14EGH31_RS13280Fi14EGH31_RS13285
Partner locus tags
Fi14EGH31_RS13280Fi14EGH31_RS13285
Partner old locus tags
Fi14EGH31_25610Fi14EGH31_25620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117792785.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I8E4X4Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I8E4X4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFi14EGH31_RS13285Primary locus identifier stored in the genes table.
Old locus tagFi14EGH31_25620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024085.1Sequence record reported by the local genomic context database.
Genomic interval2 495 671-2 496 351 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 493 978-2 496 351 ntGCF_015097455::NZ_AP024085.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015097455::NZ_AP024085.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024085.1All displayed genes belong to this local TCS context.
Neighborhood span2 493 978-2 496 351 nt2 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 493 978 nt2 496 351 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Fi14EGH31_RS13280GCF_015097455#Fi14EGH31_RS13280
HKClassic
2 493 978-2 495 669 nt · Reverse (-)
Fi14EGH31_RS13285GCF_015097455#Fi14EGH31_RS13285
RROmpRCurrent focus
2 495 671-2 496 351 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS13285The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1430536
Simplified PFAM architecture for RROC_1430536
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1430536
- Positioned domains: Response_reg 5-115 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS13285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015097455
AssemblyASM1509745v1 · Complete Genomereference genome · haploid
Genome composition2 869 982 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 20 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key