1 Response_reg#1
3-86 aa · 84 aa · 38.5% of protein
Raw token
Response_reg:3:0.0000000000379:86:94:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Fi14EGH31_RS01875
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_015097455
ClassRRTypeLytTRLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015097455#Fi14EGH31_RS01875Stable P2CS identifier used across views.
GenomeGCF_015097455Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 218 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 LytTR#2
121-208 aa · 88 aa · 40.4% of protein
Raw token
LytTR:121:0.0000000000407:208:94:98- Raw architecture: Response_reg:3:0.0000000000379:86:94:111#LytTR:121:0.0000000000407:208:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015097455::NZ_AP024085.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span343959-344615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFi14EGH31_03440RefSeq proteinWP_158562998.1
Context group ID
GCF_015097455::NZ_AP024085.1::G00005Context members
Fi14EGH31_RS01875
Partner locus tags
Fi14EGH31_RS01875
Partner old locus tags
Fi14EGH31_03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158562998.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFi14EGH31_RS01875Primary locus identifier stored in the genes table.
Old locus tagFi14EGH31_03440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024085.1Sequence record reported by the local genomic context database.
Genomic interval343 959-344 615 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span343 959-344 615 ntGCF_015097455::NZ_AP024085.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015097455::NZ_AP024085.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024085.1All displayed genes belong to this local TCS context.
Neighborhood span343 959-344 615 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
343 959 nt344 615 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Fi14EGH31_RS01875GCF_015097455#Fi14EGH31_RS01875
RRLytTRCurrent focus
343 959-344 615 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695105#PG745_RS06890Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1659881
Simplified PFAM architecture for RROC_1659881
PFAM domain coverage: 184 / 222 aa (82.9%)
1 aa222 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-104] | LytTR[127-212]
- Domain count: 2
- Matched identifier: RROC_1659881
- Positioned domains: Response_reg 7-104 ; LytTR 127-212
Cluster members and taxonomy
Representative gene: GCF_027695105#PG745_RS06890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015097455
AssemblyASM1509745v1 · Complete Genomereference genome · haploid
Genome composition2 869 982 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 20 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key